Off to New Zealand shortly myself.
Folks who've been: given the choice, travelling south from Rotorua to Wellington, would you stop over in Waitomo or Tongariro for a day or two?
Waitomo is a little bit out of your way. Otherwise it depends on whether you like mountains or caves. Weather might be a bit on the spring side for Tongariro, but it would be my call. Game-day decision, I'd say.